species:   Clros
pid:       PID1836
parent:    cro-mir-2
paralog:   
locus:     CADEHS020000002.2:2259334-2259412
matures:   ['UAGAAUUCGGGGUAGAAUG', '']
srr:       ERR5950791
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram CADEHS020000002.2:2259334-2259412

3050 out of bounds
3039 alignments
3005 proper strand
2982 stranded perfect matches

****************                                          *********************
UACCCCGAAUUCUAUGGCGGCAACUAACCUGCCGCGAUCCUAACAUUCACAUUGCCGCCAUAGAAUUCGGGGUAGAAUG
(((((((((((((((((((((((............................))))))))))))))))))))))).....
------------------------------------------------------------UAGAAUUCGGGGUAGAAUG l=19 a=2553 c
------------------------------------------------------------------------------- l=0 a=0 c*
------------------------------------------------------------UAGAAUUCGGGGUAGAAUG l=19 a=2553 ma
------------------------------------------------------------------------------- l=0 a=0 ma*

------------------------------------------------------------------UCGGGGUAGAAUG l=13 a=1 
-----------------------------------------------------------------UUCGGGGUAGAAUG l=14 a=1 
--------------------------------------------------------------GAAUUCGGGGUAGAAU- l=16 a=1 
--------------------------------------------------------------GAAUUCGGGGUAGAAUG l=17 a=1 
-------------------------------------------------------------AGAAUUCGGGGUAGAAU- l=17 a=1 
-------------------------------------------------------------AGAAUUCGGGGUAGAAUG l=18 a=4 
------------------------------------------------------------UAGAAUUCGGGGU------ l=13 a=2 
------------------------------------------------------------UAGAAUUCGGGGUA----- l=14 a=25 
------------------------------------------------------------UAGAAUUCGGGGUAGA--- l=16 a=4 
------------------------------------------------------------UAGAAUUCGGGGUAGAA-- l=17 a=16 
------------------------------------------------------------UAGAAUUCGGGGUAGAAU- l=18 a=326 
------------------------------------------------------------UAGAAUUCGGGGUAGAAa- l=18 a=1 
------------------------------------------------------------UAGAAgUCGGGGUAGAAU- l=18 a=1 
------------------------------------------------------------UAGuAUUCGGGGUAGAAU- l=18 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAGAAUG l=19 a=2553 (c,ma)
------------------------------------------------------------UAGAcUUCGGGGUAGAAUG l=19 a=1 
------------------------------------------------------------UAGAAUUaGGGGUAGAAUG l=19 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAaAAUG l=19 a=1 
------------------------------------------------------------UgGAAUUCGGGGUAGAAUG l=19 a=4 
------------------------------------------------------------UAGAAUUCGGGGUAGAAUc l=19 a=5 
------------------------------------------------------------UAGAAUUCGGGGUAGgAUG l=19 a=3 
------------------------------------------------------------aAGAAUUCGGGGUAGAAUG l=19 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAGAAUu l=19 a=1 
------------------------------------------------------------UAGAgUUCGGGGUAGAAUG l=19 a=3 
-----------------------------------------------------------AUAGAAUUCGGGGUAGAAU- l=19 a=2 
----------------------------CUGCCGCGAUC---------------------------------------- l=11 a=6 
---------------------------CCUGCCGCGAUC---------------------------------------- l=12 a=3 
----------------GCGGCAACUAACCUGCCGCGAUCCUAACAUUCACAUUGCCGCCA------------------- l=44 a=10 
-------------AUGGCGGCAACUAACCUGCCGCGAUCCUAACAUUCACAUUGCCGCCAUAGA--------------- l=51 a=1 
---------UUCUAUGGCGGCAACUAACC-------------------------------------------------- l=20 a=1 
--------AUUCUAUGGCGGCAACU------------------------------------------------------ l=17 a=2 
----CCGAAUUCUAUG--------------------------------------------------------------- l=12 a=1 
----CCGAAUUCUAUGGCGGCAACUAACC-------------------------------------------------- l=25 a=1 
UACCCCGAAUUCUAUGGC------------------------------------------------------------- l=18 a=1 
UACCCCGAAUUCUAUGGCG------------------------------------------------------------ l=19 a=3 
UACCCCGAAUUCUAUGGCGGCAA-------------------------------------------------------- l=23 a=1 
UACCCCGAAUUCUAUGGCGGCAACUAACCUG------------------------------------------------ l=31 a=2 
UACCCCGAAUUCUAUGGCGGCAACUAACCUGCCGCGAUC---------------------------------------- l=39 a=3 
UACCCCGAAUUCUAUGGCGGCAACUAACCUGCCGCGAUCCU-------------------------------------- l=41 a=3 
UACCCCGAAUUCUAUGGCGGCAACUAACCUGCCGCGAUCCUAACAUUCACA---------------------------- l=51 a=7 

mb-00110
ax-0011100
ku-11
ss-101011111010
fn-111
